scHopfield.dynamics.create_solver

scHopfield.dynamics.create_solver(adata: AnnData, cluster: str, degradation_key: str = 'gamma', spliced_key: str | None = None, x_max_percentile: float = 99.0) → ODESolver[source]

Create ODE solver for a specific cluster.

Parameters:

  • adata (AnnData) – Annotated data object with fitted interactions

  • cluster (str) – Cluster name

  • degradation_key (str, optional) – Key for degradation rates

  • spliced_key (str, optional) – Key for expression data to compute bounds. If None, uses scHopfield default.

  • x_max_percentile (float, optional (default: 99.0)) – Percentile of expression values to use as upper bound. Set to None to disable upper bound.

Returns:

Configured ODE solver with bounds

Return type:

ODESolver