scHopfield.plotting.plot_jacobian_stats_boxplots

scHopfield.plotting.plot_jacobian_stats_boxplots(adata: AnnData, cluster_key: str = 'cell_type', order: List[str] | None = None, colors: Dict[str, str] | None = None, figsize: tuple = (15, 15)) → Figure[source]

Plot boxplots of Jacobian summary statistics.

Plots distributions of: - Number of positive eigenvalues - Jacobian trace - Rotational part magnitude (if available)

Parameters:

  • adata (AnnData) – Annotated data object with computed Jacobian stats

  • cluster_key (str, optional (default: 'cell_type')) – Key in adata.obs for cluster labels

  • order (list, optional) – Order of clusters to display

  • colors (dict, optional) – Colors for each cluster

  • figsize (tuple, optional (default: (15, 15))) – Figure size

Returns:

Figure with boxplots

Return type:

plt.Figure