scHopfield.plotting.plot_energy_landscape

scHopfield.plotting.plot_energy_landscape(adata: AnnData, cluster: str, basis: str = 'umap', ax: Axes | None = None, **kwargs) → Axes

Plot energy landscape on embedding space.

Parameters:

• adata (AnnData) – Annotated data object with energy embedding

• cluster (str) – Cluster name

• basis (str, optional) – Embedding basis

• ax (plt.Axes, optional) – Axes to plot on

Returns:

Axes with plot

Return type:

plt.Axes