scHopfield.plotting.plot_trajectory

scHopfield.plotting.plot_trajectory(trajectory: ndarray, t_span: ndarray, gene_names: list | None = None, ax: Axes | None = None) → Axes[source]

Plot gene expression trajectories over time.

Parameters:

trajectory (np.ndarray) – Trajectory array (n_timepoints � n_genes)
t_span (np.ndarray) – Time points
gene_names (list, optional) – Gene names to label
ax (plt.Axes, optional) – Axes to plot on

Returns:

Axes with plot

Return type:

plt.Axes