scHopfield.plotting.plot_jacobian_element_grid

scHopfield.plotting.plot_jacobian_element_grid(adata: AnnData, gene_pairs: List[tuple], ncols: int = 2, figsize: tuple | None = None, **scatter_kwargs) → Figure[source]

Plot grid of Jacobian elements (partial derivatives) on UMAP.

This function requires dynamo for UMAP plotting. Each subplot shows df_i/dx_j for a gene pair (i, j).

Parameters:

  • adata (AnnData) – Annotated data object with computed Jacobian elements

  • gene_pairs (list of tuples) – List of (gene_i, gene_j) pairs to plot

  • ncols (int, optional (default: 2)) – Number of columns in grid

  • figsize (tuple, optional) – Figure size. If None, auto-calculated

  • **scatter_kwargs – Additional arguments passed to plotting function

Returns:

Figure with grid of plots

Return type:

plt.Figure