scHopfield.plotting.plot_top_affected_genes_bar

scHopfield.plotting.plot_top_affected_genes_bar(adata: AnnData, n_genes: int = 20, cluster: str | None = None, cluster_key: str = 'cell_type', figsize: Tuple[float, float] = (10, 8), ax: Axes | None = None) → Axes[source]

Bar plot of top affected genes showing direction and magnitude.

Parameters:

  • adata (AnnData) – Annotated data object with simulation results

  • n_genes (int, optional (default: 20)) – Number of genes to show

  • cluster (str, optional) – Specific cluster to analyze. If None, uses all cells.

  • cluster_key (str, optional (default: 'cell_type')) – Key in adata.obs for cluster labels

  • figsize (tuple, optional) – Figure size

  • ax (plt.Axes, optional) – Axes to plot on

Returns:

Axes with plot

Return type:

plt.Axes